Short Term Bioinformatics Training

At present, Bioinformatics is a fast growing field both at the level of Academia and Industry. At ArrayGen, we are keen to impart the expertise in genome-informatics through workshops and training programs. ArrayGen runs a series of bioinformatics workshops to train researchers in developing their own data analysis methods, and enabling them choose the right tools in their specific research projects.Each workshop includes both lectures and hands-on sessions.

ArrayGen offers the following genomics and bioinformatics training courses with a focus on improving participants' practical applications, by using the appropriate theoretical knowledge:

Bioinformatics ( Understanding Genomics )
Custom Data Training Program with your own datasets till publication
Biomarker Development
Cancer Bioinformatics
CRISPR/Cas9 for Genome Editing Training Program
Phylogenomics
Advanced R / Perl / Bioperl / Python / Biopython / Java for Biologist
Microarray Data analysis
Next Generation Sequencing (NGS)

De novo genome and transcriptome assembly
Chip-Seq Data Analysis
RNA-Seq Data Analysis (Ref/Denovo)
Assay for Transposase-Accessible Chromatin (ATAC-seq) Data Analysis
Single Cell RNA-Seq (scRNA-seq)
long non-coding RNA sequencing(lncRNA-Seq) Data Analysis
DNA-Seq Data Analysis
miRNA Data Analysis

Metagenomics Data Analysis
MethylSeq(DNA Methylation) Data Analysis
LncRNASeq
Genome Variant Data Analysis
Whole Genome Assembly
CircRNASeq
Genome / Exome Variant Data Analysis
RAD-Seq Data analysis

Objectives

To create an awareness with respect to the basic tools and techniques used in bioinformatics at industrial level
To provide complete hands-on-training in the basic tools and techniques
To inspire and motivate all life sciences to apply these techniques in their research programmes

## 10% Discount if you register before 25th October, 2024. Hurry up!!

Short Term Industrial Bioinformatics Training for life sciences

Training Information
Period of Training	Offline/Online - 30 days 30 days program will involve all the three modules program will involve two modules. Module I is mandatory in both the programs.
Course Fee	For course fee please request you to contact us at info@arraygen.com
Training Starting Date	Our training is one to one and training can also be started anydate as per the candidate convenience. Our working Time is 9:00 AM to 6:00 PM Indian Time Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM However you can discuss your availability time slot with us and if it will be feasible based on both convenience it will be scheduled accordingly. We do provide weekends schedule.
Training Schedule	Offline/Online - 2 Hours Daily (Monday To Friday)
Training Mode	Online/Offline Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline) Offline(For offline training candidate have to come to head office Pune and bring their own laptop). All our training is one to one and 100% focus with individual candidate which provides 100% learning.
Module - I	Advanced Bioinformatics & basic programming
Topics	Introduction to Bioinformatics Understanding Genomics Bioinformatics Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding) Gene and Genome data Vizualization - UCSC Gene Prediction and Functional annotation Industry based Tools execution (BLAST,BLAT etc) Standalone/offline BLAST Understanding for large scale genomic data handaling PCR primer designing and specificity check Basics of Programming (Python) Linux for NGS data analysis NOTE: Module-I is designed as per the industry exposure which will be completely different than academic bioinformatic and with this it will be completely helpful to understand NGS & Microarray data analysis
Module - II	Microarray (Gene Expression Profiling) Data Analysis
Topics	Microarray techniques detailed understanding Microarray Probe designing Introduction & Hands on practical on R for microarray data analysis Quality control & Normalization Differential Expressed Genes(UpRegulated & DownRegulated) Pathway & Gene Ontology Enrichment Analysis Pathway Network analysis using stringDB(PPI) & Cytoscape Pathway Network Analysis using KEGG Mapper tool for all DEG genes Different plots (Heatmap,volcano plot etc) using R
Module - III	Next Generation Sequencing (NGS) - RNASeq Data Analysis
Topics	Overview of NGS & detailed understanding Data Retrieval (NCBI SRA) & Introduction to data types Read Quality Check (FastQC & Cutadapt / fastp) Alignment of reads using reference Genome (HISAT2/STAR) Visualization of mapped reads (UCSC / IGV / ArrayGen Genome Browser) Gene Expression Quantification (Coverage,FPKM) Differential expression analysis( Cufflink, cuffmerge & cuffdiff / edgeR / Deseq2) Functinal Annotation ( DAVID / NCBI / Uniprot databases etc) Different plots (Heatmap,volcano plot etc) using R Pathway & Gene ontology enrichment analysis Pathway Network analysis using stringDB(PPI) & Cytoscape Pathway Network Analysis using KEGG Mapper tool for all DEG genes NOTE: In module-III Candidate can select Any one NGS applications DNASeq/RNASeq/Metagenomics/Chipseq/Methylseq/miRNASeq/Denovo whole Genome Assembly etc for more details please visit at http://www.arraygen.com/ngs-courses.php --- Candidates can also select multiple application of NGS as per the requirement --- 30 Days program is designed by experts with 9+ years of experience and with the completion of course one can actively work on any NGS application as the need of Industry as well as for research. Candidate will be become independent to anlyze NGS datasets of their own.
Eligibility	Anyone who is interested can apply(Any Life sciences graduate/postgraduate/PhD).
Certificate	All the participants will receive certificates on successful completion of training
Support	- live recording during training as well as training manual will be provided - Additional 2hrs of support after completion of training - server access if the candidate laptop/desktop will not support for analysis
Payment Options	Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
Place	ArrayGen, Pune, India
Contact	info@arraygen.com

Training Information
Period of Training	Offline/Online - 15 days The 15 days training will involve Module I and Module III or Module I and Module II.
Course Fee	For course fee please request you to contact us at info@arraygen.com
Training Starting Date	Our training is one to one and training can also be started anydate as per the candidate convenience. Our working Time is 9:00 AM to 6:00 PM Indian Time Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM However you can discuss your availability time slot with us and if it will be feasible based on both convenience it will be scheduled accordingly. We do provide weekends schedule.
Training Schedule	Offline/Online - 2 Hours Daily (Monday To Friday)
Training Mode	Online/Offline Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline) Offline(For offline training candidate have to come to head office Pune and bring their own laptop). All our training is one to one and 100% focus with individual candidate which provides 100% learning.
Module - I	Advanced Bioinformatics & basic programming
Topics	Introduction to Bioinformatics Understanding Genomics Bioinformatics Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding) Gene and Genome data Vizualization - UCSC Gene Prediction and Functional annotation Industry based Tools execution (BLAST,BLAT etc) Standalone/offline BLAST Understanding for large scale genomic data handaling PCR primer designing and specificity check Basics of Programming (Python) Linux for NGS data analysis NOTE: Module-I is designed as per the industry exposure which will be completely different than academic bioinformatic and with this it will be completely helpful to understand NGS & Microarray data analysis
Module - II	Microarray (Gene Expression Profiling) Data Analysis
Topics	Microarray techniques detailed understanding Microarray Probe designing Introduction & Hands on practical on R for microarray data analysis Quality control & Normalization Differential Expressed Genes(UpRegulated & DownRegulated) Pathway & Gene Ontology Enrichment Analysis Pathway Network analysis using stringDB(PPI) & Cytoscape Pathway Network Analysis using KEGG Mapper tool for all DEG genes Different plots (Heatmap,volcano plot etc) using R
OR
Module - III	Next Generation Sequencing (NGS) - RNASeq Data Analysis
Topics	Overview of NGS & detailed understanding Data Retrieval (NCBI SRA) & Introduction to data types Read Quality Check (FastQC & Cutadapt / fastp) Alignment of reads using reference Genome (HISAT2/STAR) Visualization of mapped reads (UCSC / IGV / ArrayGen Genome Browser) Gene Expression Quantification (Coverage,FPKM) Differential expression analysis( Cufflink, cuffmerge & cuffdiff / edgeR / Deseq2) Functinal Annotation ( DAVID / NCBI / Uniprot databases etc) Different plots (Heatmap,volcano plot etc) using R Pathway & Gene ontology enrichment analysis Pathway Network analysis using stringDB(PPI) & Cytoscape Pathway Network Analysis using KEGG Mapper tool for all DEG genes NOTE: In module-III Candidate can select Any one NGS applications DNASeq/RNASeq/Metagenomics/Chipseq/Methylseq/miRNASeq/Denovo whole Genome Assembly etc for more details please visit at http://www.arraygen.com/ngs-courses.php --- Candidates can also select multiple application of NGS as per the requirement --- 7 days program is designed by experts with 9+ years of experience and with the completion of course one can actively work on any NGS application as the need of Industry as well as for research. Candidate will be become independent to anlyze NGS datasets of their own.
Eligibility	Anyone who is interested can apply(Any Life sciences graduate/postgraduate/PhD).
Certificate	All the participants will receive certificates on successful completion of training
Support	- live recording during training as well as training manual will be provided - Additional 2hrs of support after completion of training - server access if the candidate laptop/desktop will not support for analysis
Payment Options	Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
Place	ArrayGen, Pune, India
Contact	info@arraygen.com

Training Information
Period of Training	Offline/Online - 7 days The 7 days training will involve NGS Module (anyone).
Course Fee	For course fee please request you to contact us at info@arraygen.com
Training Starting Date	Our training is one to one and training can also be started anydate as per the candidate convenience. Our working Time is 9:00 AM to 6:00 PM Indian Time Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM However you can discuss your availability time slot with us and if it will be feasible based on both convenience it will be scheduled accordingly. We do provide weekends schedule.
Training Schedule	Offline/Online - 2 Hours Daily (Monday To Friday)
Training Mode	Online/Offline Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline) Offline(For offline training candidate have to come to head office Pune and bring their own laptop). All our training is one to one and 100% focus with individual candidate which provides 100% learning.
Module - NGS( RNASeq [R])	Advanced Bioinformatics & basic programming
Topics	-Introduction to Bioinformatics and Overview of NGS & detailed understanding -Linux understanding and Installation of Linux and NGS tools - Data Retrieval (NCBI SRA) & Data types - Read Quality Check (FastQC & Cutadapt) - Alignment of reads using reference Genome (Tophat / STAR) - Visualization of mapped reads (UCSC & IGV) - Gene Expression Quantification (Coverage, FPKM) - Differential expression analysis (Cufflink, cuffmerge & cuffdiff) - Pathway & Gene ontology enrichment analysis - Pathway Network analysis using stringDB(PPI) & Cytoscapes - Pathway Network Analysis using KEGG Mapper tool for all DEG genes - Basics on R programming - Different plots (Heatmap,volcano plot etc) using R NOTE: In module-III Candidate can select Any one NGS applications DNASeq/RNASeq/Metagenomics/Chipseq/Methylseq/miRNASeq/Denovo whole Genome Assembly etc for more details please visit at http://www.arraygen.com/ngs-courses.php --- Candidates can also select multiple application of NGS as per the requirement --- 7 days program is designed by experts with 9+ years of experience and with the completion of course one can actively work on any NGS application as the need of Industry as well as for research. Candidate will be become independent to anlyze NGS datasets of their own.
Eligibility	Anyone who is interested can apply(Any Life sciences graduate/postgraduate/PhD).
Certificate	All the participants will receive certificates on successful completion of training
Support	- live recording during training as well as training manual will be provided - Additional 2hrs of support after completion of training - server access if the candidate laptop/desktop will not support for analysis
Payment Options	Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
Place	ArrayGen, Pune, India
Contact	info@arraygen.com

We also offer customised training in Microarray data analysis, if participant want to perform analysis with their own raw data as well as custom tools or cutom pipelines or automate parallel execution or as per the reference paper or new algorithm development as per the candidate request it comes under custom training. If microarray platform is Agilent or illumina it will come under custom training. Please send us inquiry and one of our business executive will contact you soon.

We also offer customised training in NGS data analysis, if participant want to perform analysis with their own raw data as well as custom tools or cutom pipelines or automate parallel execution or as per the reference paper or new algorithm development as per the candidate request it comes under custom training. If NGS platform is pacbio or nanopore it will come under custom training. Please send us inquiry and one of our business executive will contact you soon.

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