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Application
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CADD
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Period of Training
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Online - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ]
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Course Fee
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For course fee please request you to contact us at info@arraygen.com
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Training Starting Date
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Our training is one to one and training can also be started anytime and anydate as per the candidate convenience.
** Weekend Batches are also available as per the request
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Training Slots
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Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
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Training Mode
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Online
Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline)
All our training is one to one and 100% focus with individual candidate which provides 100% learning.
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Module - I
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Ligand Based Drug Design(Pharmacophore design)
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Topics
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Introduction to Bioinformatics and Understanding Genomics, Proteomics and CADD
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Databases(NCBI- GeneDB and ProteinDB,PubMed,Uniprot,KEGG Pathway,PubChem,Drug Bank,RCSB-PDB,ZINC,ModBase)
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Understanding file formats (sdf,mol,pdb)
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1D Line Notations (SMILES, InChI)
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Sequence Based Search Tool [BLAST]
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Linux Installation + Commands + CADD Tools installation [Gromacs, etc.]
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Python Programming for handling large Data or Automation process
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Collection of primary key data
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Pharmacophore preparation
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Chemical Library preparation based on Pharmacophore
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Insilico Screening (ADME)
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Toxicity screening
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QSAR (Quantitative structure-activity relationship) Model
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Module - II
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Structure based Drug Design (target-ligand docking)
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Topics
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Introduction to Structure based Drug Design and process layout of Docking
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Data mining, literature study and acquisition of target structure
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Comparative modelling of protein (Homology modelling) *target structure not available
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Server based –PHYRE, RaptorX, SWISSMODEL, I-TASSER, etc.
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Ramachandran plot assessment(RAMPAGE,Pdbsum,Procheck)
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Active site/ Pocket identification –MetaPocket,CastP,Active site identification using PyMol
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Molecular Docking *using AutoDock vina/AutoDock Tools/PyRx (For docking of multiple ligands)
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Protein and ligand preparation
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Setting grid parameters and Docking parameters
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Docking analysis (based on binding energy, Hydrogen bond interactions, electrostatic interactions, hydrophobic interactions, etc.)
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BINANA (BINding ANAlyser)
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Pdbsum for visualising protein-ligand interactions
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Building protein-ligand complex and visualization(publication standard)
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Visualisation of GWAS results (Manhattan plot and QQ-Plot)
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Report construction
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Module - III
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Molecular Dynamics(MD) Simulation
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Topics
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Introduction to Molecular Dynamics Simulation
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Basic Principles of Molecular Dynamics Simulations(Non-bonded interactions,Bonding Potentials, Force fields)
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Molecular Dynamics Simulation using GROMACS/VMD-NAMD
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Installation of softwares required for simulations
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Definition of molecular structures, Force field and topology,Preparation of files
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Simulation(Energy Minimization,Heating,Equilibration,Production)
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Analysis of results
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Simulating many molecules
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Eligibility
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B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
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Certificate
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All the participants will receive certificates on successful completion of training
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Place
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ArrayGen, Pune, India
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Contact
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info@arraygen.com
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