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Application
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CADD
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Period of Training
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Offline - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ]
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Online - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ]
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Course Fee
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For course fee please request you to contact us at info@arraygen.com
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Training Starting Date
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Our training is one to one and training can also be started anytime and anydate as per the candidate convenience.
** Weekend Batches are also available as per the request
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Training Slots
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Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
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Training Mode
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Online/Offline
Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop).
All our training is one to one and 100% focus with individual candidate which provides 100% learning.
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Module - I
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Ligand Based Drug Design(Pharmacophore design)
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Topics
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Introduction to Bioinformatics and Understanding Genomics, Proteomics and CADD
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Databases(NCBI- GeneDB and ProteinDB,PubMed,Uniprot,KEGG Pathway,PubChem,Drug Bank,RCSB-PDB,ZINC,ModBase)
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Understanding file formats (sdf,mol,pdb)
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1D Line Notations (SMILES, InChI)
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Sequence Based Search Tool [BLAST]
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Linux Installation + Commands + CADD Tools installation [Gromacs, etc.]
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Python Programming for handling large Data or Automation process
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Collection of primary key data
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Pharmacophore preparation
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Chemical Library preparation based on Pharmacophore
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Insilico Screening (ADME)
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Toxicity screening
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QSAR (Quantitative structure-activity relationship) Model
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Module - II
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Structure based Drug Design (target-ligand docking)
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Topics
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Introduction to Structure based Drug Design and process layout of Docking
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Data mining, literature study and acquisition of target structure
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Comparative modelling of protein (Homology modelling) *target structure not available
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Server based –PHYRE, RaptorX, SWISSMODEL, I-TASSER, etc.
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Ramachandran plot assessment(RAMPAGE,Pdbsum,Procheck)
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Active site/ Pocket identification –MetaPocket,CastP,Active site identification using PyMol
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Molecular Docking *using AutoDock vina/AutoDock Tools/PyRx (For docking of multiple ligands)
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Protein and ligand preparation
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Setting grid parameters and Docking parameters
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Docking analysis (based on binding energy, Hydrogen bond interactions, electrostatic interactions, hydrophobic interactions, etc.)
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BINANA (BINding ANAlyser)
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Pdbsum for visualising protein-ligand interactions
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Building protein-ligand complex and visualization(publication standard)
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Visualisation of GWAS results (Manhattan plot and QQ-Plot)
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Report construction
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Module - III
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Molecular Dynamics(MD) Simulation
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Topics
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Introduction to Molecular Dynamics Simulation
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Basic Principles of Molecular Dynamics Simulations(Non-bonded interactions,Bonding Potentials, Force fields)
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Molecular Dynamics Simulation using GROMACS/VMD-NAMD
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Installation of softwares required for simulations
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Definition of molecular structures, Force field and topology,Preparation of files
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Simulation(Energy Minimization,Heating,Equilibration,Production)
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Analysis of results
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Simulating many molecules
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Eligibility
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B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
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Certificate
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All the participants will receive certificates on successful completion of training
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Place
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ArrayGen, Pune, India
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Contact
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info@arraygen.com
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