Pan-genome
Pan-genome Microarrays are used to determine the genetic makeup of unknown microbial strains and can
introduce insights into phylogenetic relationships. At ArrayGen, we help you to design high-quality probes
for Pan-genome Microarrays which would help identify genotyping of unknown microbial isolates.
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Genome wide determination of the genetic makeup of an un-known microbial iso-lates
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Determine novel genomes and multiple genomes in a mixture
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Validate the gene context of an unknown genome from re-sequencing next generation sequencing (NGS) data using microarrays
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Arrays designed according to gene contexts of an unknown genome of interest to the customer
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Cluster generation using CD-Hit and our own in-house propriatory tool
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60-mer probe length
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Probe selection based on %TM, %GC, PolyX, 3' end, self hybridization, nonoverlaping and high hybridization specificity
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Removal of probes in repeat-masked and vector-masked regions
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In silico hybridization check for each probe by BLASTN
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We design one probe per target ( Core, Accessory and Unique ) regions. In case you would like to add more than one probe for each target, please let us know.
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We also include additional probes for technical QC
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Control probes are added based on platform specific protocol. In case you would like to add your own control probes, please let us know.
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Complete annotation of designed probes for fast and easy data interpretation
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High confidence in the design of your arrays
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We focus on quality assurance followed by quality control process of array design
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Maximum flexibility in array content and format to identify genome-wide expression levels of thousands of genes
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Ensures highest level of coverage, uniformity, specificity and sensitivity of your arrays
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Quick turnaround time from 3 days to a week
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Cost-effective formats for your array designing
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Complete support on array designing services