About us

ArrayGen Technologies – Genomics & Data Science Innovation

ArrayGen Technologies is Global leading customer-focused genomics and bioinformatics solutions provider, dedicated to delivering cutting-edge, customized services across a broad spectrum of life sciences research. With a strong foundation in next-generation sequencing, computational biology, and molecular diagnostics, we empower researchers and organizations with data-driven insights to accelerate scientific discovery and innovation. Our approach integrates scientific precision with sustainability—promoting environmentally conscious research practices that align with global efforts toward a greener, healthier planet. At ArrayGen, excellence in science goes hand-in-hand with responsibility toward our clients, our community, and the environment.

Over the past 13 years, ArrayGen Technologies has successfully executed more than 5,000 next-generation sequencing (NGS) and microarray projects as well as custom projects driving impactful innovations across healthcare and agricultural genomics. Our strong collaborative network with leading global research institutions fuels our commitment to scientific advancement. Through these strategic partnerships and our deep domain expertise, we continue to contribute to breakthroughs that improve lives, enhance crop yields, and shape the future of precision science.

Under the leadership of our expert team, ArrayGen Technologies has developed GAME V2—a comprehensive, all-in-one solution for NGS data analysis that supports a wide range of NGS applications. We are also proud to have launched the ArrayGen Genome Browser, India's first indigenous genome visualization platform, designed to simplify genomic data exploration for researchers across domains.

Our advanced infrastructure is equipped with high-performance computing servers that support scalable, high-quality genomic research. Backed by a multidisciplinary team of experts—including geneticists, bioinformaticians, Python developers, and AI specialists—we deliver precise, reliable data analysis and generate actionable insights tailored to diverse research needs. This robust combination of technology and expertise ensures that ArrayGen Technologies remains at the forefront of innovation in genomics and bioinformatics.


Leadership
Rajesh Mahato

Rajesh Mahato

Founder & CEO (Director)
(Bioinformatics Scientist with 15+ Years of Industrial Experience)
Project Summary
NGS 96%
Microarray 80%
custom Analysis 99%
Bioinformatics 90%
Industrial Training 99%
Metabolomics 45%
WGS Assembly 81%

What We Do

What sets Arraygen apart is our deep domain knowledge, agile approach, and client-centric mindset. We don’t just build solutions — we build partnerships, bringing clarity, precision, and purpose to every project we undertake.


NGS Data Analysis

Whole genome, exome, transcriptome, and metagenomics data analysis using industry-standard pipelines.

Custom Software Development

Tools, dashboards, and pipelines tailored for genomic data processing, visualization, and reporting.

Clinical Bioinformatics

Variant calling, annotation, and interpretation for rare disease, oncology, and pharmacogenomics.

Agrigenomics

Genomic selection, trait mapping, and biodiversity analysis to improve crops and livestock.

Research & Discovery

Collaborations with academic, pharmaceutical, and research institutions for omics-driven discovery.

Custom Data Analysis

Tailored solutions for complex data analysis, pipeline development, and project-specific informatics needs.




Why ArrayGen

At ArrayGen Technologies, our values are the foundation of everything we do—from delivering exceptional bioinformatics solutions to empowering scientific progress globally.

EXCELLENCE

We strive for excellence through scientific leadership, collaboration, and a strong focus on quality. Our teams are driven to deliver high impact bioinformatics and big data solutions that push the boundaries of innovation.

INNOVATION

We champion innovation at the intersection of genetics, molecular biology, and data science—developing forward thinking solutions that support a smarter, healthier, and more sustainable world.

QUALITY

With a clientcentric approach and a team of experienced scientists, we ensure every project meets the highest standards. Our personalized, precise solutions consistently exceed expectations.




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Explore our tools and database


ArrayGen TGCA Expression Map

TCGA Expression Map is an interactive resource for exploring RNA-seq differential expression across 24 human cancer types, covering 42,461 human genes from the TCGA (The Cancer Genome Atlas) study. This dataset includes RNA-seq data from more than 10,000 cancer patients across multiple tumor types. After careful preprocessing, we performed differential expression analysis using standard differential expression methods, comparing case vs. control samples for each cancer type to generate reliable log2 fold change (log2FC) values.

ArrayGen Heatmap Generator

ArrayGen HeatMap Generator is an online tool for researchers to generate heatmap from RNASeq differential Log2 fold change based on case and control. It also accepts FPKM expression values.

Omics2Biomarker (O2B)

An ML Framework is a machine learning–driven platform for biomarker which identifies DEGs using gene expression data and trains a deep neural network (DNN) for disease classification, and applies SHAP to highlight predictive biomarker genes with insights.