Metabolomics Analysis

Metabolomics is the study of the metabolome, the complete set of small-molecule chemicals found in a biological sample (cells, tissues, biofluids, etc.).

ArrayGen Bioinformatics services are powered by AI (Artificial Intelligence) in metabolomics are transforming how biological data is analyzed, interpreted, and applied. These services combine computational biology with machine learning, deep learning, and natural language processing to automate and improve the accuracy of complex data-driven tasks in genomics, proteomics, transcriptomics, and more.

IMG

Metabolomics Data Processing and Interpretation

We Cover

  • Untargeted (Global): Detects as many metabolites as possible
  • Targeted: Focuses on specific known metabolites or pathways

Platform Supported

LC-MS/MS or GC-MS

Metabolomic Data Analysis Workflow

  • Data Preprocessing
    • Peak detection
    • Deconvolution
    • Alignment (retention time or m/z)
    • Normalization (to account for technical variation)
  • Feature Annotation / Identification
  • Statistical Analysis
  • Pathway Analysis

Machine Learning in Metabolomics

Integrative Multi-Omics Analysis


Why ArrayGen

At ArrayGen Technologies, our values are the foundation of everything we do—from delivering exceptional bioinformatics solutions to empowering scientific progress globally.

EXCELLENCE

We strive for excellence through scientific leadership, collaboration, and a strong focus on quality. Our teams are driven to deliver high impact bioinformatics and big data solutions that push the boundaries of innovation.

INNOVATION

We champion innovation at the intersection of genetics, molecular biology, and data science—developing forward thinking solutions that support a smarter, healthier, and more sustainable world.

QUALITY

With a clientcentric approach and a team of experienced scientists, we ensure every project meets the highest standards. Our personalized, precise solutions consistently exceed expectations.




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Explore our tools and database


ArrayGen TGCA Expression Map

TCGA Expression Map is an interactive resource for exploring RNA-seq differential expression across 24 human cancer types, covering 42,461 human genes from the TCGA (The Cancer Genome Atlas) study. This dataset includes RNA-seq data from more than 10,000 cancer patients across multiple tumor types. After careful preprocessing, we performed differential expression analysis using standard differential expression methods, comparing case vs. control samples for each cancer type to generate reliable log2 fold change (log2FC) values.

ArrayGen Heatmap Generator

ArrayGen HeatMap Generator is an online tool for researchers to generate heatmap from RNASeq differential Log2 fold change based on case and control. It also accepts FPKM expression values.

Omics2Biomarker (O2B)

An ML Framework is a machine learning–driven platform for biomarker which identifies DEGs using gene expression data and trains a deep neural network (DNN) for disease classification, and applies SHAP to highlight predictive biomarker genes with insights.