Microarray Data Analysis

ArrayGen offers a range of microarray data analysis solutions ranging from quality control, differential expression, enriched peak detection, methylated regions, insertion / deletion and SNP calls to help researchers derive meaningful conclusions from their data. We are highly experts in analyzing microarray data coming from Agilent,Affymetryx and illumina platforms.

At ArrayGen Technologies, we harness the power of microarray data analysis to unlock complex biological insights at the genomic level. This cutting-edge technology enables high-throughput analysis of gene expression across thousands of genes simultaneously, offering a powerful lens into cellular function and regulation.

Our advanced bioinformatics platforms and domain expertise allow us to transform raw microarray data into meaningful biological interpretations. Through precise analysis, we help uncover gene functions, identify disease-specific biomarkers, and track genetic variations critical for understanding disease mechanisms.

Microarray expression profiling is a core tool in many of our projects — from cancer genomics and pharmacogenomics to diagnostics and personalized medicine. Whether it's identifying novel therapeutic targets or stratifying patient responses, our solutions support a broad spectrum of applications in research and healthcare innovation.

At ArrayGen, we don’t just analyze data — we generate insights that accelerate discovery, drive translational research, and support next-generation healthcare solutions. Our commitment to accuracy, scalability, and scientific rigor ensures our clients stay at the forefront of genomics-driven breakthroughs.

ArrayGen provides different applications of arraydesign services

Array Design Services

Arraygen provided expertise in array design applications across all Agilent platforms as well as all other platforms.

Applications of Array Design Services

  • Gene Expression
  • MicroRNA
  • Pan-genome
  • Alternative splicing
  • Chip-on-chip
  • DNA Methylation
  • aCGH / CNV
  • SNP
  • Target Capture
ArrayGen provides different applications of microarray data analysis services including

Gene Expression Profiling Analysis

Gene Expression Microarrays detect genome-wide gene expression. At ArrayGen, we help you design high quality probes with extensive coverage for identifying expression levels of thousands of genes.

miRNA Analysis

MicroRNAs (miRNAs) based Microarrays are used to determine genome-wide miRNAs expression profile. At ArrayGen, we help you to design high quality probes for miRNAs Microarrays which would help to detect the presence and/or regulation of a wide range of defined miRNAs

Chip-on-Chip Analysis

ArrayGen offers a range of microarray data analysis solutions ranging from quality control, differential expression, enriched peak detection, methylated regions, insertion / deletion and SNP calls to help researchers derive meaningful conclusions from their data.

DNA Methylation Analysis

DNA methylation Microarrays are used to quickly scan through an entire genome for DNA methylation analysis. At ArrayGen, we help you to design high density probes for DNA methylation studies which would provide insight into epigenetic events which regulate gene expression.

aCGH / CNV Analysis

Array Comparative Genomic Hybridization (aCGH) and Copy Number Variation (CNV) analysis—powerful tools detecting genomic alterations contributing to genetic disorders, cancers, and complex diseases. Our high-resolution aCGH platforms enable genome-wide screening of chromosomal gains, losses, and amplifications with exceptional accuracy.

SNP Analysis

SNP (Single Nucleotide Polymorphism) microarray solutions enable high-resolution, genome-wide analysis of genetic variation with unparalleled efficiency and accuracy. By examining hundreds of thousands to millions of SNP markers across the genome, we empower researchers and clinicians to uncover the genetic basis of complex traits and diseases.

Microarray Expression(GEO Datasets)

ArrayGen specialize in the efficient sourcing and processing of gene expression data from leading public repositories such as GEO (Gene Expression Omnibus) and ArrayExpress. Our streamlined approach ensures that researchers gain timely access to high-quality, curated datasets tailored to their specific research objectives.

Alternate Splicing Analysis

ArrayGen provide specialized alternative splicing microarray analysis to uncover the complexity of gene regulation beyond expression levels. Alternative splicing plays a critical role in expanding proteomic diversity and is implicated in numerous biological processes and disease mechanisms, including cancer, neurodegeneration, and immune disorders.

miRNA profiling Analysis

ArrayGen offer specialized microRNA (miRNA) profiling services using high-resolution microarray platforms to uncover the regulatory roles of miRNAs in health and disease. miRNAs are small, non-coding RNA molecules that play a critical role in post-transcriptional gene regulation and are increasingly recognized as valuable biomarkers for diagnostics, prognostics, and therapeutic targeting.

NGS data Validation using Microarray

ArrayGen offer custom microarray solutions specifically designed for the validation of Next-Generation Sequencing (NGS) findings. While NGS offers powerful genome-wide discovery, validation using microarrays remains a cost-effective, high-throughput, and highly reproducible approach—especially for targeted confirmation of candidate genes, variants, or expression patterns.

What We Offer at ArrayGen?
At ArrayGen Technologies, we offer a comprehensive Microarray Expression Data analysis Services that spans the entire analytical pipeline—from data acquisition to advanced bioinformatics interpretation. Our service is designed to support researchers at every stage, enabling high-impact insights from large-scale expression data. We begin by assisting clients in sourcing high-quality microarray datasets from trusted public repositories such as GEO (Gene Expression Omnibus) and ArrayExpress. Using efficient retrieval tools and curated accession-based searches, we ensure accurate and timely collection of relevant datasets aligned with specific research questions.

Once the data is obtained, our team conducts rigorous bioinformatics analysis, including:

-Quality assessment and normalization
-Differential gene expression analysis
-Clustering and visualization
-Functional annotation and pathway enrichment
-Integration with clinical or experimental metadata

Each project is customized to meet the unique objectives of our clients, whether it's disease-specific biomarker discovery, drug target validation, or mechanistic pathway analysis.

With deep domain expertise and scalable workflows, ArrayGen Technologies empowers researchers to transform raw microarray data into actionable biological insights—quickly, accurately, and efficiently.

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